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Cosmos Study

Which Comorbidities Increase the Risk of a COVID-19 Breakthrough Infection?

Abstract: Solid organ transplant, pregnancy, and immune system deficiencies are associated with greater rates of COVID-19 breakthrough infections after vaccination.
March 31, 2022
Dual-Team Study
Team A:Dave Little, MDEric BarkleyJames Kibitel
Team B: Nikki Carrico, PharmDJoe McNitt

Underlying medical conditions associated with high risk for severe COVID-19 are outlined by the CDC.1 In this study, we quantify how certain comorbidities could affect the risk of a breakthrough COVID-19 case, defined as getting a COVID-19 infection after being fully vaccinated.  

To evaluate the impact of each comorbidity on breakthrough COVID-19 rates, we compared fully vaccinated patients from similar communities by creating case and control pairs of vaccinated patients from the same state and primary care organization. In each pair, the control patient had the same comorbidity groups as the case patient except for the comorbidity of interest. For example, to assess the impact of Down syndrome, we evaluated a case patient with both Down syndrome and liver disease and compared that to a control patient with only liver disease.  

Figure 1
Breakthrough Risk for Given Comorbidity
Breakthrough Risk for Given Comorbidity
Figure 1. Risk of breakthrough COVID-19 infection for each comorbid condition. An odds ratio of 2 would mean that patients with that comorbidity were twice as likely to have a breakthrough infection.  

We found that many of the comorbidity groups are at a higher risk of a breakthrough infection. Notably, pregnant individuals are 1.91 times as likely to have a breakthrough infection, individuals with a solid organ transplant are 1.83 times as likely, and individuals with an immune system deficiency are 1.63 times as likely.  

However, in our study, we did not find that cancer or Down syndrome increased the risk of a breakthrough infection. This is consistent with other research on the rates of COVID-19 in populations with cancer versus populations without.2  

These findings support the CDC’s recommendation that patients with a high-risk comorbidity may need to use enhanced infection prevention control beyond vaccination to minimize the risk of a COVID-19 breakthrough infection.3 


These data come from Cosmos, a HIPAA-defined Limited Data Set of more than 140 million patients from 161 Epic organizations including 960 hospitals and 20,814 clinics, serving patients in all 50 states. This study was completed by two teams, each composed of a clinician and research scientists who worked independently. The two teams came to similar conclusions. 

References

  1. Centers for Disease Control and Prevention. Underlying Medical Conditions Associated with Higher Risk for Severe COVID-19: Information for Healthcare Providers. https://www.cdc.gov/coronavirus/2019-ncov/hcp/clinical-care/underlyingconditions.html. Published October 14, 2021. 
  2. Johannesen, T. B., Smeland, S., Aaserud, S., Buanes, E. A., Skog, A., Ursin, G., & Helland, Å. (2021). COVID-19 in Cancer Patients, Risk Factors for Disease and Adverse Outcome, a Population-Based Study From Norway. Frontiers in oncology, 11, 652535. 
  3. Centers for Disease Control and Prevention. COVID-19: People with Certain Medical Conditions. https://www.cdc.gov/coronavirus/2019-ncov/need-extra-precautions/people-with-medical-conditions.html. Updated February 25, 2022.